- Training4lifescience - lists.nfdi.de

Invitation to PANGAEA Community Workshop 25/11 - "FAIR DATA PUBLICATIONS WITH PANGAEA"

by Judith Engel

Dear all, Registration is now open for “PANGAEA Community Workshop 25/11 - FAIR data publications with PANGAEA” taking place on the 13. & 14.11.2025 <https://events.hifis.net/e/CWS2511> Join us for a 2-day, four hour workshop on FAIR data publications with PANGAEA, where you will learn how to efficiently prepare, submit, and publish your research data. Through a balanced mix of theory, hands-on practice, and live demonstrations, participants will experience the full process of data submission—from initial upload to editorial review—while gaining insights into best practices, authors’ guidelines, automation options, and practical templates for major data types. This event is ideal for researchers seeking to enhance their data publication workflow and ensure their datasets are shared openly and effectively through PANGAEA. Explore the agenda or secure your spot h <https://events.hifis.net/e/CWS2511>ere: https://events.hifis.net/event/3172/

6 months, 3 weeks

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Invitation to de.NBI & ELIXIR-DE and GHGA Webinar - image-based spatial transcriptomics - 20.11.205, 13:00 CET

by González Ribao, Vanessa

*** Bitte beachten Sie, dass diese Veranstaltung ausschließlich in englischer Sprache stattfindet *** Dear NFDI lifescience Community, de.NBI & ELIXIR Germany<https://www.denbi.de/> and GHGA<http://www.ghga.de/> (The German Human Genome Phenome Archive) is inviting you to the next episode of our joint Webinar Series: Beginners guide of data processing for image-based spatial transcriptomics technologies. This webinar is intended for researchers who are new to the field of spatial transcriptomics. It provides an introduction to commonly used image-based spatial omics technologies and demonstrates the data processing workflow through a practical example. The webinar will focus primarily on data preprocessing steps and will only briefly touch upon downstream analyses such as domain detection. The webinar will be held by Florian Heyl from DKFZ Heidelberg (GHGA). The event is in English, it takes approx. 60 minutes and will be held on 20th November 2025, 13:00 CET. Attendance is free, but we ask for registration.<https://dkfz-de.zoom.us/meeting/register/PfYv-8ySTn-_UfIUhlVfmg#/registrati…> [cid:image001.png@01DC4F1B.3FF03390] For more information or registration, visit our event website<https://www.ghga.de/events/detail/the-denbi-elixir-de-and-ghga-knowledge-se…>. The Organisation Team of the de.NBI & ELIXIR-DE and GHGA Knowledge Series GHGA - German Human Genome-Phenome Archive - www.ghga.de<http://www.ghga.de> de.NBI & ELIXIR Germany - www.denbi.de<http://www.denbi.de> Kind regards, Dr. Vanessa González Ribao German Human Genome-Phenome Archive Training Coordinator for Data Protection www.ghga.de German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 280 69120 Heidelberg Germany vanessa.gonzalezribao(a)dkfz-heidelberg.de<mailto:vanessa.gonzalezribao@dkfz-heidelberg.de> www.dkfz.de<http://www.dkfz.de/> [cid:image002.png@01DC4F1B.3FF03390] Management Board: Prof. Dr. med. Dr. h. c. Michael Baumann, Ursula Weyrich VAT-ID No.: DE143293537

6 months, 3 weeks

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WiNoDa Webinar on December 2nd: "Leverage the growing wave of ecological data using AI image recognition"

by Bellini, Ginevra

Dear colleague, I would like to invite you to the upcoming WiNoDa<https://winoda.de/en/english/> <https://winoda.de/en/english/> webinar “Leverage the growing wave of ecological data using AI image recognition”, taking place on December 2nd at 1pm (CET) on Zoom. [cid:6dc5db6b-37cc-4c40-9e17-06a00ed092cd] Camera traps and other autonomous sensors are generating more wildlife data than ever before. This has enormous potential to extract valuable information, but manually sorting through such datasets is often too time- and resource-intensive. Artificial Intelligence can speed up this work by automatically classifying large volumes of information in minutes. Yet AI is not perfect: miss-classifications can easily distort downstream ecological insights if not handled correctly. Join the webinar with Timm Haucke<https://timm.haucke.xyz/> from MIT to learn how to apply AI carefully in your research. You will discover: * How to run and evaluate AI models on your own ecological data * How to reduce the impact of classification errors on your analyses * A practical workflow for fitting species occupancy models using AI-generated labels from a real camera trap dataset Designed for ecologists and biodiversity scientists seeking efficient and reliable ways to process sensor-derived data. Learn how to transform raw data into trustworthy ecological knowledge. The event is free, in English and online. Register here and secure your spot: LINK<https://winoda.de/en/event/webinar-ecological-data-ai-image-recognition/>. We hope to see you there! Kind regards, Ginevra Bellini ~~~ Dr. Ginevra Bellini (she/her_sie/ihr) Community Manager WiNoDa Knowledge Lab Email: ginevra.bellini(a)mfn.berlin<mailto:ginevra.bellini@mfn.berlin> Visit our webiste: https://winoda.de/en/english/ Follow us on LinkedIn: https://www.linkedin.com/company/winoda/ Follow us on Mastodon: https://nfdi.social/@WiNoDa View previous webinars on our YouTube channel: https://www.youtube.com/@WiNoDaKnowledgeLab Museum für Naturkunde Berlin Leibniz-Institut für Evolutions- und Biodiversitätsforschung Invalidenstraße 43 10115 Berlin | Germany [cid:image002.png@01DC3136.799D76F0]

6 months, 3 weeks

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NFDI4 Earth Academy Coffee Lecture "Scale Usually Wins: compute, data, and the bitter lesson for Earth & industry" 04.11.2025 4-5 pm

by nfdi4earth-academy＠groups.tu-dresden.de

Dear all, We cordially invite you to the *NFDI4Earth Academy Coffee lecture - "Scale Usually Wins: compute, data, and the bitter lesson for Earth & industry"* (/Artemii Novoselov, Stripe/) *today*. We’ll unpack the evidence behind scaling laws - Kaplan et al. (loss vs params/tokens/compute) and Chinchilla (data-optimal scaling) - then test the thesis in Earth-system modeling and geoscience. We’ll compare academic incentives (benchmarks, novelty) to production constraints (latency/$, throughput, drift, governance), and show where small, specialized models still win. Case studies will include Earth foundation/forecast models such as GraphCast, and AlphaEarth. We’ll close with a pragmatic budgeting recipe: choose your token-to-parameter target, plan for quantization/distillation, and align eval to mission metrics. *Key Details*: Date: November 04, 2025 Time: 04:00 PM - 05:00 PM Venue: Online via Zoom The lecture is open to all. To join the lecture, *please register* here <https://gfz-de.zoom.us/meeting/register/TiMa7w9KQYSiVGyCzKzvZA#/registration>. Grab a coffee, tea, and join us virtually to expand your knowledge; also in our upcoming lectures <https://www.nfdi4earth.de/?view=article&id=366&catid=9>. We are looking forward to your participation. Best regards, Jonas Kuppler NFDI4Earth Academy Coordination --

6 months, 3 weeks

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Registration now open for “PANGAEA Community Workshop 25/11 - FAIR data publications with PANGAEA” // 13. & 14.11.2025

by Juliane Röder

+++ Our apologies for cross-posting - you may receive more than one copy of this email. Forwarding this message to your colleagues and network is greatly appreciated. +++ Dear All, we are happy to announce that the registration for our next edition of our “PANGAEA Community Workshop” series has now been opened. *In focus this time*: "FAIR data publications with PANGAEA" (including a lot of new content!)** *What*: Join us for a 2-day, 4-hour workshop on FAIR data publications with PANGAEA, where you will learn how to efficiently prepare, submit, and publish your research data. Through a balanced mix of theory, hands-on practice, and live demonstrations, participants will experience the full process of data submission—from initial upload to editorial review—while gaining insights into best practices, authors’ guidelines, automation options, and practical templates for major data types. This event is ideal for researchers seeking to enhance their data publication workflow and ensure their datasets are shared openly and effectively through PANGAEA. Have a look at the agenda <https://events.hifis.net/e/CWS2511> to get an idea what we have in the pipeline for you. *When*: November 13 *and* 14 '25, both 10:30am - 12:30pm CEST (UTC+2) *Where*: Online (via Zoom) - Please register here <https://events.hifis.net/e/CWS2511>! If you have any questions please do not hesitate to contact us at training(a)pangaea.de. With kind regards the PANGAEA workshop team PS: You are receiving this message because you are either enrolled to our training mailing list <https://lists.pangaea.de/listinfo/training> or you are considered a multiplier for a specific network of interest. If you would prefer not to receive these emails, please consider unsubscribing from the list or, in the latter case, send us a short message. Thank you! ------------------------------------------------------------------------ PANGAEA Data Publisher Unicom 2, Haus Oxford Room 4.3270 Mary-Somerville-Str. 2 28359 Bremen Germany email: training(a)pangaea.de web: www.pangaea.de

6 months, 4 weeks

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Die Lizenz zum Forschen: Wem gehören Forschungsdaten und was darf ich damit tun?

by Sophie Bosse

Liebe Alle, der Survivalguide for Law and Ethics in Research von FAIRagro, NFDI4Biodiversity und NFDI4Earth geht in die nächste Runde! Unsere nächste Episode trägt den Titel: "Die Lizenz zum Forschen: Wem gehören Forschungsdaten und was darf ich damit tun?" Von Messwerten im Feld über komplexe Modellierungen bis hin zur Textpublikation - Forschungsdaten in der Agrosystem-, Erdsystem und Umweltforschung sind divers und oft das Herzstück eines Projekts. Doch wer hat hieran eigentlich Rechte und wie darf ich sie teilen und nachnutzen? Taucht in unserem dreitägigen Workshop ein in die Welt von Urheberrecht, Lizenzen und Gemeinfreiheit. Erhaltet eine verständliche und praxisnahe Erklärung, wann Forschungsdaten urheberrechtlich geschützt sind und welche Lizenzsysteme - von Creative Commons bis zu speziellen Softwarelizenzen - in der Forschung sinnvoll eingesetzt werden können. Entdeckt über das Urheberrecht hinaus eine Verbündete in der Guten Wissenschaftlichen Praxis. Übt anhand realer Beispiele, Lizenztexte zu verstehen, passende Lizenzen und public domain marks zu vergeben, um rechtliche Fallstricke zu vermeiden. Mit einer Mischung aus Impulsen, Diskussionen und praktischen Übungen vermittelt der Workshop das nötige Rüstzeug, um Daten rechtlich fundiert, verantwortungsvoll und zugleich offen zu nutzen und zu teilen. Der Workshop findet in deutscher Sprache statt und richtet sich an Forschende der Agrosystems-, Umwelt-, Biodiversitäts- und Erdsystemwissenschaften. Interesse? Registriert euch hier:https://fairagro.net/event/legal-workshop-episode-iii-die-lizenz-zum-f… [FAIRagro Legal Workshop Series: Don't Panic! A Survival Guide for Law and Ethics in Research. Episode III: Die Lizenz zum Forschen: Wem gehören Forschungsdaten und was darf ich damit tun?] Wir sehen uns im November! Sophie Sophie Boße (sie/ihr) Trainingskoordinatorin FAIRagro ZB MED - Informationszentrum Lebenswissenschaften Gleueler Str. 60 50931 Köln bosse(a)zbmed.de<mailto:bosse@zbmed.de> +49 221 999892642 www.zbmed.de<http://www.zbmed.de/> INFORMATION. WISSEN. LEBEN.

7 months

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NFDI4 Earth Academy Coffee Lecture "Introducing Galaxy for Earth System" 28.10.2025 4-5 pm

by Jonas Kuppler

Dear all, We cordially invite you to the *NFDI4Earth Academy Coffee lecture - "From basin to canopy: modern ML applications across geoscience modalities"* (/Artemii Novoselov, Stripe/) *next Tuesday*. Geoscience is a buffet of data modalities - seismic cubes, SAR/optical satellite stacks, LiDAR DEMs, well logs, and more. This talk is an application-first tour of methods that made previously impossible things routine: discovery of hundreds of new Nazca geoglyphs; automatic mapping of ancient structures in jungle LiDAR; diffusion-based cloud removal and super-resolution for multispectral imagery; and fast surrogates for seismic simulation and inversion. For each vignette, we’ll pair the task (segmentation, denoising, inversion, super-res, change detection, embeddings, forecasting, surrogate modeling, UQ) with the method that worked in practice - Transformers, U-Nets, diffusion, and neural operators - plus open datasets and reproducible baselines. You’ll leave with a pragmatic playbook: how to pick models by modality and task, evaluate properly, and avoid common pitfalls in geospatial ML. *Key Details*: Date: October 28, 2025 Time: 04:00 PM - 05:00 PM Venue: Online via Zoom The lecture is open to all. To join the lecture, *please register* here <https://gfz-de.zoom.us/meeting/register/zX9v9CsYQvOPktOI8Yz6cQ#/registration>. Grab a coffee, tea, and join us virtually to expand your knowledge; also in our upcoming lectures <https://www.nfdi4earth.de/?view=article&id=366&catid=9>. We are looking forward to your participation. Best regards, Jonas -- *Dr. Jonas Kuppler* Interdisciplinary Training | Team "Synergies & Networks" Coordinator NFDI4Earth Academy | HIDA Liaison Officer Phone: +49 331 6264-1090 Mail: jonas.kuppler(a)gfz.de Web: NFDI4Earth Academy <https://www.nfdi4earth.de/2participate/academy> & Synergies & Networks <https://www.gfz-potsdam.de/en/about-us/organisation/board-bodies-administra…> *GFZ Helmholtz Centre for Geosciences* Public Law Foundation State of Brandenburg Telegrafenberg, D-14473 Potsdam ___________________________________ #CallMeByMyFirstName Profil: https://www.gfz-potsdam.de/en/staff/jonas.kuppler

7 months, 1 week

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[27th October] NFDI4Microbiota Coffee Talk: Meta-omics Analysis at a Bioinformatics Core Facility – As FAIR as Possible

by Magel, Maja

Dear microbiome research enthusiasts and bioinformatics aficionados, curious about smoother microbiome research? Grab your coffee and join us online! Reproducible, easily shareable workflows are essential for bioinformatics. This holds true for all areas of bioinformatics research, including microbiome research. To facilitate the centralized collection of high-quality Nextflow workflows, nf-core was established with strong involvement from the Quantitative Biology Center (QBiC) core facility. These workflows are used, extended, and improved by a large community in a standardized manner, making a wide range of bioinformatics analyses more accessible and easier to execute than ever before. This presentation will introduce QBiC, discuss some challenges faced, and present examples of solutions, with a focus on data analysis. 📢 NFDI4Microbiota Coffee Talk: Meta-omics Analysis at a Bioinformatics Core Facility – As FAIR as Possible presented by Daniel Straub (QBiC Tübingen) 📅 Date: Monday, 27th October2025 🕒 Time: 14:30-15:30 CET (Berlin time) https://rwth.zoom-x.de/j/69637480434?pwd=aq6VlWq8JB8w3W4OJ3P3pI7aQcRahP.1 📍 Zoom Meeting ID: 696 3748 0434 🔒 Passcode: 760425 >>> Feel free to share this with your peers! PS: Struggling with nextflow and nf-core? Daniel will be offering a weekly drop-in session and offer consultation on a first come - first serve basis. ______________________________________________________________ ______________________________________________________________ 📢 A new mailinglist: Offering Life Science training events beyond the microbiome universe The Life Science associated NFDIs have joined efforts in gathering and promoting relevant Life Science training events for you. 📍 If mailinglists are how you stay updated, then don't forget to subscribe! Mailing-List: training4lifescience(a)lists.nfdi.de<mailto:training4lifescience@lists.nfdi.de> Join via mail to: training4lifescience-join(a)lists.nfdi.de<mailto:training4lifescience-join@lists.nfdi.de> or subscribe with your existing Postorius-Account via: https://lists.nfdi.de/postorius/lists/training4lifescience.lists.nfdi.de/ A teaser on what you can look forward to: 1. NFDI4Earth Academy Coffee lecture - "Machine Learning Fundamentals with Application Examples" (Sonja Hänzelmann & Susana Simancas Giraldo, AWI) 📅October 15th, register here<https://gfz-de.zoom.us/meeting/register/Lu8vWZhtQA2MBPLS8Wxwtg#/registration>. Content: Introduction to Machine Learning, Supervised vs. Unsupervised Learning – key concepts and use cases, Unsupervised Learning – Finding patterns in data (Clustering, Dimensionality Reduction) and Supervised Learning – Prediction models (Classification, Regression). Level: Beginner-friendly, perfect for anyone looking to better understand and apply ML methods. 1. in German: GFBio Data Submission und Brokerage Service<https://submissions.gfbio.org/> für biologische, ökologische und Biodiversitätsdaten (Dr. Ivaylo Kostadinov, Gesellschaft für Biologische Daten (GFBio e.V.) 📅October 21st, 11:00 -12:00, register here<https://www.nfdi4biodiversity.org/de/events/biodiversitea-17/>. Looking forward to Monday! Kind regards Maja (Magel) on behalf of NFDI4Microbiota's Outreach team Carmen (Paulmann), Lina (Junctorius), Mattea (Müller), Maja (Magel) https://nfdi4microbiota.de/ Maja Magel https://nfdi4microbiota.de/ Projektkoordination NFDI4Microbiota Institut für Medizinische Mikrobiologie Research Group Functional Microbiome [cid:image001.png@01D7E834.38ACC870] ________________________________________ Tel.: +49 (0) 241 80-38117 E-Mail: mmagel(a)ukaachen.de<mailto:mmagel@ukaachen.de> Aufzug D4, Etage 5, Raum 34 Universitätsklinikum Aachen Pauwelsstraße 30 52074 Aachen

7 months, 3 weeks

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NFDI4 Earth Academy Lecture "Machine Learning Fundamentals with Application Examples" 15.10.2025 9-12

by nfdi4earth-academy＠groups.tu-dresden.de

Dear all, We cordially invite you to the *NFDI4Earth Academy Coffee lecture - "Machine Learning Fundamentals with Application Examples"* (/Sonja Hänzelmann & Susana Simancas Giraldo, AWI/) *next Wednesday*. Content: Introduction to Machine Learning, Supervised vs. Unsupervised Learning – key concepts and use cases, Unsupervised Learning – Finding patterns in data (Clustering, Dimensionality Reduction) and Supervised Learning – Prediction models (Classification, Regression). Level: Beginner-friendly, perfect for anyone looking to better understand and apply ML methods. *Key Details*: Date: October 15, 2025 Time: 09:00 AM - 12:00 PM Venue: Online via Zoom The lecture is open to all. To join the lecture, *please register* here <https://gfz-de.zoom.us/meeting/register/Lu8vWZhtQA2MBPLS8Wxwtg#/registration>. Grab a coffee, tea, and join us virtually to expand your knowledge; also in our upcoming lectures <https://www.nfdi4earth.de/?view=article&id=366&catid=9>. We are looking forward to your participation. Best regards, Jonas Kuppler Coordination NFDI4Earth Academy --

7 months, 3 weeks

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Einladung: BiodiversiTea (21.10., 11-12 Uhr): Daten veröffentlichen mit dem GFBio Data Submission and Brokerage Service

by Judith Engel

Einladung zur Vorstellung des GFBio Data Submission und Brokerage Service Wo und wie kann ich meine Forschungsdaten veröffentlichen? Datenpublikation und -management sind entscheidende Bausteine einer offenen und FAIRen Biodiversitätsforschung. Doch wer als Wissenschaftler:in ihre/seine Daten veröffentlichen möchte, steht oft vor einigen Herausforderungen - angefangen bei der Auswahl des passenden Repositoriums über die Beschreibung der Daten bis hin zu Entscheidungen über Lizenzen und den Zeitpunkt der Freigabe. Hilfe für biologische, ökologische und Biodiversitätsdaten bietet der GFBio Data Submission and Brokerage Service (https://submissions.gfbio.org/), der Forschende Schritt für Schritt dabei unterstützt, Biodiversitätsdaten in den zehn disziplinspezifischen Datenzentren des GFBio-Datenzentrennetzwerks zu veröffentlichen. Im kommenden BiodiversiTea werfen wir einen Blick auf den Dienst – und dabei auch auf geplante Neuerungen. Wann und wo? Dienstag, 21. Oktober 2025 | 11.00 - 12.00 Uhr | Online | Sprache: Deutsch Unser Referent Dr. Ivaylo Kostadinov, Gesellschaft für Biologische Daten (GFBio e.V.), Bremen Anmeldung & nähere Infos https://www.nfdi4biodiversity.org/de/events/biodiversitea-17/ <https://www.nfdi4biodiversity.org/de/events/biodiversitea-17/>Die Session ist wie immer offen für alle. Teilt diese Einladung (und unseren LinkedIn-Post zum Thema <https://www.linkedin.com/posts/nfdi4biodiv_biodiversitea-gfbio-activity-738…>) gern in eurem Netzwerk und bringt eure Fragen und Perspektiven mit. Über das Format BiodiversiTea ist ein offenes Austauschformat zu Projekten, Tools und Themen aus der NFDI4Biodiversity-Community und darüber hinaus – bei einer Tasse Tee (oder Kaffee). Die Veranstaltung findet jeden dritten Dienstag im Monat von 11–12 Uhr statt und ist offen für alle Interessierten; eine Zugehörigkeit zum Netzwerk ist nicht erforderlich. Mitmachen Fragen zum Format oder Interesse, selbst eine Session zu gestalten? Schreib uns an helpdesk(a)nfdi4biodiversity.org. Wir freuen uns, wenn ihr am 21. Oktober dabei seid! Viele Grüße aus dem BiodiversiTea Team, Judith Engel

7 months, 3 weeks

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2026

2025

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