Dear TA1/2 Members,
This is a friendly reminder about our joint TA1/TA2 call scheduled for tomorrow from 11:00 - 12:00 (11:58). You can join the call using the following link: https://conf.dfn.de/webapp/#/?conference=979176819. The PIN is 7570 (host pin: 7579).
You can find the call minutes on the NFDI4Immuno NextCloud under Task Area 1 > Call minutes (https://nextcloud.nfdi4immuno.de/f/1608). The agenda for tomorrow's call is stored at the same location.
If you're unable to attend, please let me know. Regular joint TA1/TA2 calls are every Thursday 11:00 - 12:00.
Best,
Ulrik
----
Dr. rer. nat. Ulrik Stervbo
Center for Translational Medicine, Immunology, and Transplantation
Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität Bochum
Hölkeskampring 40
44623 Herne
Germany
Immundiagnostik
Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität Bochum
Düngelstr 33
44623 Herne
Germany
Tel: +49 234 509 590 54
www.marienhospital-herne.de/TranslationaleMedizin<http://www.marienhospital-herne.de/TranslationaleMedizin>
www.babel-lab.de<http://www.babel-lab.de/>
_______________________________________________________________
Mitten in der St. Elisabeth Gruppe:
St. Anna Hospital Herne, Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität Bochum,
Marien Hospital Witten, Rheumazentrum Ruhrgebiet, St. Marien Hospital Eickel,
Medizinische Reha für psychische Gesundheit, St. Elisabeth Stift Herne, Senioreneinrichtungen Widumer Höfe,
Gästehaus St. Elisabeth, Ambulante Pflege, MVZ Ärzte - Herne | Wanne | Witten,
Lukas Hospiz Herne, St. Elisabeth Hospiz Witten, Bildungszentrum Ruhr, Bildungswerk,
Campus der St. Elisabeth Gruppe, Kinder in der St. Elisabeth Gruppe
_______________________________________________________________
Aufsichtsratsvorsitzender: Dr. Hans Willmes
Geschäftsführung: Dr. Sabine Edlinger, Simone Lauer
Registergericht:
HRB 9735 Amtsgericht Bochum
St.-Nr.: 325/5894/2251
_______________________________________________________________
Wir bitten wegen der aktuellen Virenangriffe um folgende Beachtung:
Das Sicherheitskonzept der St. Elisabeth Gruppe erlaubt momentan keine Zustellung von .doc
(x) und .xls(x) Dateien! Schicken Sie Dokumente nur in Form von .pdf Dateien oder nehmen Sie
Kontakt auf, um andere Übertragungsmöglichkeiten abzusprechen.
Dear all,
thank you very much for voting.
The result clearly says, that Q4 of 2025 is the favoured time for the meeting.
As the regular BioMed Meeting will be in this timeframe as well, it would make sense
to have our Meeting shortly before or after, at the same location.
This will not only have the general topic discussion in close proximity,
but will also reduce our travel time. So it has clear advantages.
In our next meeting on the 7th of May, we will have an idea finding session
Where we will align our expectations and see the different views and aspects.
This session will require your active participation to integrate your consortias needs.
The details for the next Meetings are below and attached in the *.ics Outlook file.
BioMed Interoperability Meeting
07 May 2025; 13:00 - 14:30 pm
https://eu01web.zoom.us/j/65323902168?pwd=rAOnZsUXDstE4rIUqys4hqL4lQQ93Y.1
Meeting-ID: 653 2390 2168
Kenncode: 281423
Looking forward seeing you all in May.
Best wishes,
Sebastian
Dr. Sebastian Böhm
Institut für Immunologie
___________________________________________
Friedrich-Loeffler-Institut
Bundesforschungsinstitut für Tiergesundheit
Federal Research Institute for Animal Health
Südufer 10 | 17493 Greifswald - Insel Riems
Tel: +49 38351 7 1889
https://www.fli.de/
¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯
Instagram<https://www.instagram.com/loeffler_news>
LinkedIn<https://www.linkedin.com/company/friedrich-loeffler-institut>
Von: Böhm, Sebastian <Sebastian.Boehm(a)fli.de>
Gesendet: Donnerstag, 27. März 2025 09:13
An: anandhi.iyappan <anandhi.iyappan(a)embl.de>; Daniel Conde <daniel-juan.sivizaca-conde(a)charite.de>; florian.heyl <florian.heyl(a)dkfz.de>; josh <josh(a)openmicroscopy.org>; karoline.mauer <karoline.mauer(a)dzne.de>; Koepler, Oliver <Oliver.Koepler(a)tib.eu>; koray.kirli <koray.kirli(a)dkfz-heidelberg.de>; kuebra.narci <kuebra.narci(a)dkfz.de>; Luiz.Gadelha <Luiz.Gadelha(a)dkfz-heidelberg.de>; Maja Magel <mmagel(a)ukaachen.de>; Mallm, Jan-Philipp <j.mallm(a)dkfz-heidelberg.de>; martin.golebiewski <martin.golebiewski(a)h-its.org>; mschulze <mschulze(a)dife.de>; Naouel Karam <karam(a)infai.org>; NFDI TA1&2 (nfdi4immuno-ta1-2(a)lists.nfdi.de) <nfdi4immuno-ta1-2(a)lists.nfdi.de>; Noriko Cassmann <noriko.cassman(a)gmail.com>; Roman Baum <baum(a)zbmed.de>; Susanne Kunis <sukunis(a)uos.de>; sven.nahnsen <sven.nahnsen(a)uni-tuebingen.de>; usax <usax(a)med.uni-goettingen.de>; Vorisek, Carina Nina <carina-nina.vorisek(a)bih-charite.de>
Betreff: [nfdi4immuno-ta1+2] BioMed Interoperability Workshop 2025
Dear all,
I hope you're doing fine.
Trying to organise the in-person meeting in Leipzig, I identified
three dates for a two-days Workshop before summer holidays.
The following link will bring you to the poll, in order to
Identify which date is most suitable:
https://nuudel.digitalcourage.de/bKtTyKHItNqJzszG<https://scanmail.trustwave.com/?c=4477&d=5rXl507s5SbaATeM5RBVk6JzTlBp8GQmpG…>
If none of them are suitable, you can vote for a later date,
which will then be at earliest in October.
Please vote until the end of next week: DEADLINE 4th of April
so that we don't miss our favourite free spot for the workshop!
For the case that you are planning to attend, please make sure to vote,
so that I do have oversight about the group size.
We can discuss at our next regular meeting on the 07th of May the result of the poll
and the content of the Workshop. The Workshop should be suitable for everyones needs,
so please make sure to bring forward your needs at the next Meeting in May.
Looking forward seeing you there.
Best wishes,
Sebastian
Dr. Sebastian Böhm
Institut für Immunologie
___________________________________________
Friedrich-Loeffler-Institut
Bundesforschungsinstitut für Tiergesundheit
Federal Research Institute for Animal Health
Südufer 10 | 17493 Greifswald - Insel Riems
Tel: +49 38351 7 1889/1602
https://www.fli.de/<https://scanmail.trustwave.com/?c=4477&d=5rXl507s5SbaATeM5RBVk6JzTlBp8GQmpG…>
¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯
Instagram<https://scanmail.trustwave.com/?c=4477&d=5rXl507s5SbaATeM5RBVk6JzTlBp8GQmpG…>
LinkedIn<https://scanmail.trustwave.com/?c=4477&d=5rXl507s5SbaATeM5RBVk6JzTlBp8GQmpG…>
Dear TA1/2 Members,
This is a friendly reminder about our joint TA1/TA2 call scheduled for tomorrow from 11:00 - 12:00 (11:58). You can join the call using the following link: https://conf.dfn.de/webapp/#/?conference=979176819. The PIN is 7570 (host pin: 7579).
We have the following updates/FYI/reminders which we will not cover at the call:
- New presentation uploaded to Task Area 1 > Presentations
You can find the call minutes on the NFDI4Immuno NextCloud under Task Area 1 > Call minutes (https://nextcloud.nfdi4immuno.de/f/1608). The agenda for tomorrow's call is stored at the same location.
If you're unable to attend, please let me know. Regular joint TA1/TA2 calls are every Thursday 11:00 - 12:00.
Best,
Ulrik
----
Dr. rer. nat. Ulrik Stervbo
Center for Translational Medicine, Immunology, and Transplantation
Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität Bochum
Hölkeskampring 40
44623 Herne
Germany
Immundiagnostik
Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität Bochum
Düngelstr 33
44623 Herne
Germany
Tel: +49 234 509 590 54
www.marienhospital-herne.de/TranslationaleMedizin<http://www.marienhospital-herne.de/TranslationaleMedizin>
www.babel-lab.de<http://www.babel-lab.de/>
_______________________________________________________________
Mitten in der St. Elisabeth Gruppe:
St. Anna Hospital Herne, Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität Bochum,
Marien Hospital Witten, Rheumazentrum Ruhrgebiet, St. Marien Hospital Eickel,
Medizinische Reha für psychische Gesundheit, St. Elisabeth Stift Herne, Senioreneinrichtungen Widumer Höfe,
Gästehaus St. Elisabeth, Ambulante Pflege, MVZ Ärzte - Herne | Wanne | Witten,
Lukas Hospiz Herne, St. Elisabeth Hospiz Witten, Bildungszentrum Ruhr, Bildungswerk,
Campus der St. Elisabeth Gruppe, Kinder in der St. Elisabeth Gruppe
_______________________________________________________________
Aufsichtsratsvorsitzender: Dr. Hans Willmes
Geschäftsführung: Dr. Sabine Edlinger, Simone Lauer
Registergericht:
HRB 9735 Amtsgericht Bochum
St.-Nr.: 325/5894/2251
_______________________________________________________________
Wir bitten wegen der aktuellen Virenangriffe um folgende Beachtung:
Das Sicherheitskonzept der St. Elisabeth Gruppe erlaubt momentan keine Zustellung von .doc
(x) und .xls(x) Dateien! Schicken Sie Dokumente nur in Form von .pdf Dateien oder nehmen Sie
Kontakt auf, um andere Übertragungsmöglichkeiten abzusprechen.
Dear colleagues,
in our weekly coding group meeting some questions regarding the structure (not the content!) of the excel submission template came up and we decided that it would be beneficial if we could all agree on some rules regarding the structure of the template, as well as a nomenclature that defines how properties should be named.
You might wonder why this is important, but it would enable us (the coding group) to write more universal code and generally simplify things. Below, I outlined our current preferences regarding template structure and nomenclature. Of course, none of this is set in stone yet and should you diagree with anything or want to add something, we will discuss this at our next TA1/2 meeting. I will also write this into the overview document under "3.7.2 Submission Template – General Structure & Nomenclature", you can just add to it there.
1. Relational classes (i.e. "Study", "Subject", ...) are each a single sheet in the file. The sheet name would be in Camel-case (i.e. "Study", "ExperimentalProtocol", "LabSample")
2. The properties for each class are each a column in the corresponding sheet. Column names are in Snake-case (i.e. "access_type", "sample_type", "species")
3. All relational keys (primary and foreign) follow the same syntax: First the sheet name in lower case, then an underscore and then "ID", examples: "subject_ID", "labsample_ID"
Open question: Should the template contain additional information that will guide the user when filling the template? Additional information could be: A short description of the property, allowed values / types, can multiple values be entered (and if yes, how to separate them correctly), is the property required/recommended/optional?
Looking forward to any feedback on this!
Best,
Vera
Dear all,
I hope you're doing fine.
Trying to organise the in-person meeting in Leipzig, I identified
three dates for a two-days Workshop before summer holidays.
The following link will bring you to the poll, in order to
Identify which date is most suitable:
https://nuudel.digitalcourage.de/bKtTyKHItNqJzszG<https://scanmail.trustwave.com/?c=4477&d=qobl521VMpBwkaHLcQuQQEgMP1qYwZEniL…>
If none of them are suitable, you can vote for a later date,
which will then be at earliest in October.
Please vote until the end of next week: DEADLINE 4th of April
so that we don't miss our favourite free spot for the workshop!
For the case that you are planning to attend, please make sure to vote,
so that I do have oversight about the group size.
We can discuss at our next regular meeting on the 07th of May the result of the poll
and the content of the Workshop. The Workshop should be suitable for everyones needs,
so please make sure to bring forward your needs at the next Meeting in May.
Looking forward seeing you there.
Best wishes,
Sebastian
Dr. Sebastian Böhm
Institut für Immunologie
___________________________________________
Friedrich-Loeffler-Institut
Bundesforschungsinstitut für Tiergesundheit
Federal Research Institute for Animal Health
Südufer 10 | 17493 Greifswald - Insel Riems
Tel: +49 38351 7 1889/1602
https://www.fli.de/
¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯
Instagram<https://www.instagram.com/loeffler_news>
LinkedIn<https://www.linkedin.com/company/friedrich-loeffler-institut>
Dear all,
Is a need for the call tomorrow? Are there any updates from the groups and tasks we need to discuss?
I only have this one update: For the all hands meeting in Berlin, there will be a longer separate session focused on simulating a data submission process from opening a webpage to data deposit to searching for data. There should be no more than two participants form each TA as to not dilute the other break out sessions.
Best,
Ulrik
----
Dr. rer. nat. Ulrik Stervbo
Center for Translational Medicine, Immunology, and Transplantation
Marien Hospital Herne – Universitätsklinikum der Ruhr-Universität Bochum
Hölkeskampring 40
44623 Herne
Germany
Immundiagnostik
Marien Hospital Herne – Universitätsklinikum der Ruhr-Universität Bochum
Düngelstr 33
44623 Herne
Germany
Tel: +49 234 509 590 54
www.marienhospital-herne.de/TranslationaleMedizin<http://www.marienhospital-herne.de/TranslationaleMedizin>
www.babel-lab.de<http://www.babel-lab.de>
_______________________________________________________________
Mitten in der St. Elisabeth Gruppe:
St. Anna Hospital Herne, Marien Hospital Herne – Universitätsklinikum der Ruhr-Universität Bochum,
Marien Hospital Witten, Rheumazentrum Ruhrgebiet, St. Marien Hospital Eickel,
Medizinische Reha für psychische Gesundheit, St. Elisabeth Stift Herne, Senioreneinrichtungen Widumer Höfe,
Gästehaus St. Elisabeth, Ambulante Pflege, MVZ Ärzte – Herne | Wanne | Witten,
Lukas Hospiz Herne, St. Elisabeth Hospiz Witten, Bildungszentrum Ruhr, Bildungswerk,
Campus der St. Elisabeth Gruppe, Kinder in der St. Elisabeth Gruppe
_______________________________________________________________
Aufsichtsratsvorsitzender: Dr. Hans Willmes
Geschäftsführung: Dr. Sabine Edlinger, Simone Lauer
Registergericht:
HRB 9735 Amtsgericht Bochum
St.-Nr.: 325/5894/2251
_______________________________________________________________
Wir bitten wegen der aktuellen Virenangriffe um folgende Beachtung:
Das Sicherheitskonzept der St. Elisabeth Gruppe erlaubt momentan keine Zustellung von .doc
(x) und .xls(x) Dateien! Schicken Sie Dokumente nur in Form von .pdf Dateien oder nehmen Sie
Kontakt auf, um andere Übertragungsmöglichkeiten abzusprechen.