9:34 a.m.
FYI
Von: Garcia-Castro, Leyla Jael <ljgarcia(a)zbmed.de>
Gesendet: Donnerstag, 11. September 2025 10:30
An: nfdi-all(a)lists.nfdi.de
Betreff: [NFDI-all] Bioschemas talk Monday 15.Sep.2025 at 17:00 CEST - The FAIRSCAPE
Digital Commons for Ethical AI in Translational Medicine
Dear all at NFDI,
If you are interested in semantics, explainable AI, and biomedical and translational
medicine, this Bioschemas talk could be of your interest.
What: Bioschemas community call - Invited talk "The FAIRSCAPE Digital Commons for
Ethical AI in Translational Medicine"
When: Monday 15.Sep.2025 at 17:00 CEST
Where: See Zoom details below
Who: Tim Clark, University of Virginia School of Medicine, Department of Public Health
Sciences
Abstract: Biomedical and translational medicine applications of AI impose strong
explainability (XAI) requirements for reliable research results and ethical translation to
the clinic. These include a need for robust pre-model XAI to prevent black-boxing of data
acquisition and preparation events. FAIRSCAPE is an open-source digital commons platform
developed to support these needs in collaboration with University of Virginia and
University of California San Diego biomedical researchers as part of the $130M NIH
Bridge2AI program. It provides a digital commons environment in Python implementing the
Bridge2AI AI-readiness principles on biomedical datasets and provides ethical FAIRness
with deep semantic provenance graphs on components such as datasets, software,
computations, runtime parameters, environment and personnel involved in a computational
analysis. FAIRSCAPE generates detailed human- and machine-readable biomedical Datasheets
using JSON-LD serialized schema.org and Evidence Graph Ontology metadata packaged in
RO-Crates, including Croissant and Croissant RAI metadata for direct interface to Kaggle
and other AI/ML Ops packages, and provides a rich environment for biomedical AI
researchers. Remote client tools provide packaging of these metadata with datasets, or
dataset references, and their schemas, for upload to a server running under Kubernetes.
Data is held in S3-compliant buckets and metadata is stored in MongoDB. REST APIs are
provided along with a REACT-based Web interface to the server and export interfaces to
NIH-recommended long-term archives.
Short bio: Clark's work intersects several fields, including public health, data
science, and neurology. He teaches in Public Health Sciences and Neurology in the School
of Medicine, and in the School of Data Science. Clark's research interests include
biomedical informatics, neuroscience, Alzheimer's Disease and disorders of cognition,
knowledge representation and integration, digital commons frameworks, ontologies, FAIR
data, FAIR software, FAIR computation, argumentation frameworks, and evidence graphs
Agenda:
https://docs.google.com/document/d/1kd5F97ogdiPNhLTnkei-RVR8TC8Ohpc5QSPX3...
Zoom details.
Topic: Bioschemas Community Meeting - Tim Clark
Time: Sep 15, 2025 05:00 PM Amsterdam, Berlin, Rome, Stockholm, Vienna
Join Zoom Meeting
https://us02web.zoom.us/j/81552565788?pwd=2yI4nyybEdCbYAq1yGkdD2U8loQ5EJ.1
Meeting ID: 815 5256 5788
Passcode: 839213
Join instructions (by phone)
https://us02web.zoom.us/meetings/81552565788/invitations?signature=LflWEc...
Kind regards,
Jael
-----
Dr. Leyla Jael Castro ljgarcia@zbmed.de<mailto:ljgarcia@zbmed.de> |
@ljcastro@fosstodon.org
Semantic Technologies @BibLabs - Team leader
ZB MED - Information Centre for Life Sciences
Gleueler Straße 60
50931 Cologne
ljgarcia@zbmed.de<mailto:ljgarcia@zbmed.de>
+49 (0)221/999-892529
www.zbmed.de<http://www.zbmed.de>
INFORMATION. KNOWLEDGE. LIFE.
________________________________
From: Nathalie Rathgeb
<Nathalie.Rathgeb@nfdi.de<mailto:Nathalie.Rathgeb@nfdi.de>>
Sent: Wednesday, September 3, 2025 2:49 PM
To: nfdi-all@lists.nfdi.de<mailto:nfdi-all@lists.nfdi.de>
Subject: [NFDI-all] NFDITalk (15 Sep): Datenschutz, Wissenschaft und Forschung -
Widerspruch oder Chance?
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Datenschutz, Wissenschaft und Forschung - Widerspruch oder Chance?
15 September, 4 PM - Online
Sprecher: Tino Melzer, Landesdatenschutzbeauftragter für Thüringen
Über den Talk:
Der Vortrag auf Deutsch verdeutlicht, wie Datenschutz, Wissenschaft und Forschung
zusammenwirken. Er geht auf die datenschutzrechtlichen Bestimmungen zur Forschung ein und
zeigt auf, dass Datenschutz die Qualität und Legitimität der Forschung sichert.
Diese NFDITalk-Folge wird gemeinsam mit der Sektion Ethical, Legal & Social Aspects
organisiert.
Hier geht es zum Zoom Meeting:
https://us02web.zoom.us/j/87966293929?pwd=ME1YSTBhY1NZWHo1bWhtcVFNaFZVQT09
Meeting-ID: 879 6629 3929
Code: 931849
Teilen Sie den YouTube stream: https://www.youtube.com/live/ovyXGR5Re_Y
Beste Grüße
Nathalie Rathgeb
Wissenschaftliche Referentin PR/Kommunikation
Nationale Forschungsdateninfrastruktur (NFDI) e.V.
Albert-Nestler-Str. 13
76131 Karlsruhe
Tel. +49 721 988 994 20
Mail nathalie.rathgeb@nfdi.de<mailto:nathalie.rathgeb@nfdi.de>
Web www.nfdi.de<http://www.nfdi.de>
Impressum & Datenschutz
https://www.nfdi.de/impressum-datenschutz/
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_______________________________________________________________
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St. Anna Hospital Herne, Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität
Bochum,
Marien Hospital Witten, Rheumazentrum Ruhrgebiet, St. Marien Hospital Eickel,
Medizinische Reha für psychische Gesundheit, St. Elisabeth Stift Herne,
Senioreneinrichtungen Widumer Höfe,
Gästehaus St. Elisabeth, Ambulante Pflege, MVZ Ärzte - Herne | Wanne | Witten,
Lukas Hospiz Herne, St. Elisabeth Hospiz Witten, Bildungszentrum Ruhr, Bildungswerk,
Campus der St. Elisabeth Gruppe, Kinder in der St. Elisabeth Gruppe
_______________________________________________________________
Aufsichtsratsvorsitzender: Dr. Hans Willmes
Geschäftsführung: Dr. Sabine Edlinger, Simone Lauer
Registergericht:
HRB 9735 Amtsgericht Bochum
St.-Nr.: 325/5894/2251
_______________________________________________________________
Wir bitten wegen der aktuellen Virenangriffe um folgende Beachtung:
Das Sicherheitskonzept der St. Elisabeth Gruppe erlaubt momentan keine Zustellung von
.doc
(x) und .xls(x) Dateien! Schicken Sie Dokumente nur in Form von .pdf Dateien oder nehmen
Sie
Kontakt auf, um andere Übertragungsmöglichkeiten abzusprechen.
