Dear Colleagues,
Here is the summary of today's regular TA1/2 call. Thank you all for the great
discussions! Please take a moment to rate the quality of today's call:
https://ulrikstervbo.aidaform.com/meeting-quality-feedback.
Next call is Thursday October 30 at 11:00.
Action Items
* Ulrik: Clarify with Christian Busse about regulation regarding external partners
(beta-testers) placing human data on NextCloud. Will report to the group at the next
meeting.
* Metadata people will meet to clarify how to make progress on the metadata schema and
appoint responsible lead for each topic (Study, Subject and Sample). Will report to the
group at the next meeting.
Call Summary
* Sebastian Ferrara suggested to organise a workshop or hands on tutorial for working
with GitLab and LinkML. The response was positive and circulated a poll after the meeting
(
https://nuudel.digitalcourage.de/4xAqEEQEeL1e5sjX)
* Ulrik presented the reason for and thoughts about how to enable data submission
before the full repository is in place. The slides can be found here:
https://nextcloud.nfdi4immuno.de/f/33306
* Ferrara asked about automated checks of the data. Ulrik argued that automatic is
better for the final product, but that manual curation is easier as a low tech solution.
* Böhm asked about legal considerations to human data on NextCloud. Ulrik will
check
* Lina reported on the research into ISA-Tools.
* It is a complete suite of tools to create and validate ISA objects to manage
different life science, environmental and biomedical experiments.
* We discussed how to proceed with labelling properties in the metadata model not at
odds with GDPR to enable search and aggregation. This is handled in search, not needed in
schema
* Ulrik gave an overview of the status of the development of the different components
* We discussed how to overcome the Metadata-model stagnation
Backlog Items
None
Best,
Ulrik
----
Dr. rer. nat. Ulrik Stervbo
Center for Translational Medicine, Immunology, and Transplantation
Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität Bochum
Hölkeskampring 40
44623 Herne
Germany
Immundiagnostik
Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität Bochum
Düngelstr 33
44623 Herne
Germany
Tel: +49 234 509 590 54
www.marienhospital-herne.de/TranslationaleMedizin<http://www.marienhos...
www.babel-lab.de<http://www.babel-lab.de/>
_______________________________________________________________
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Senioreneinrichtungen Widumer Höfe,
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Lukas Hospiz Herne, St. Elisabeth Hospiz Witten, Bildungszentrum Ruhr, Bildungswerk,
Campus der St. Elisabeth Gruppe, Kinder in der St. Elisabeth Gruppe
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Geschäftsführung: Dr. Sabine Edlinger, Simone Lauer
Registergericht:
HRB 9735 Amtsgericht Bochum
St.-Nr.: 325/5894/2251
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