Dear Colleagues,
Here is the summary of today’s regular TA1/2 call. Thank you all for the great discussions! Please take a moment to rate the quality of today’s call: https://ulrikstervbo.aidaform.com/meeting-quality-feedback.
Next call is Thursday October 16 at 11:00.
## Action Items
- Metadata people: Mark properties in metadata model not at odds with GDPR to be made available for searches without being logged into the repository (public search). Will report at next call
- Lina: Look at ISA tools to determine if it should be on our radar - Ulrik will send information. Lina will report at next call
- Ulrik will connect Baum with SB and CE re TS4NFDI integration project
## Call Summary
- BioMed meeting: Attendance by some consortia is reason for changes to the program
- CE volunteered together with SB to initiate a TS4NFDI integration project
- Lina volunteered to look at ISA tools to see if it is something to keep on our radar
- We discussed open questions regarding using GitLab and LinkML
- Raised concerns were why and how to even get started
- It GitLab truly relevant for all team members
- We discussed progress blockers. Vera flagged the need for definition of metadata properties that can safely be made available for searchers without being logged in to the repository.
- Updates on backlog items
- Front-end related were postponed for later
- Closed question about Wagtail for user management as this is considered a thing for TA4
- Technical solutions for privacy: Issues will be created in relevant GitLab repos
- Discussion about data - laboratory generated or mocked/synthetic?
- A longer discussion focused on rich study metadata and assay data for AIRR-seq. Conclusion:
- Synthetic metadata and sequence/FCS data for DRFZ server
- Own data for metadata model validation
## Backlog Items
None
Best,
Ulrik
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Dr. rer. nat. Ulrik Stervbo
Center for Translational Medicine, Immunology, and Transplantation
Marien Hospital Herne – Universitätsklinikum der Ruhr-Universität Bochum
Hölkeskampring 40
44623 Herne
Germany
Immundiagnostik
Marien Hospital Herne – Universitätsklinikum der Ruhr-Universität Bochum
Düngelstr 33
44623 Herne
Germany
Tel: +49
234 509 590 54
www.marienhospital-herne.de/TranslationaleMedizin
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