12:25 p.m.
Dear Colleagues,
Here is the summary of today's regular TA1/2 call. Thank you all for the great
discussions! Please take a moment to rate the quality of today's call: [Meeting
Quality Feedback](https://ulrikstervbo.aidaform.com/meeting-quality-feedback).
Tomorrow Mariama will give the second instalment of how to work with Git and GitLab.
November 20, Ulrik will present the consortium timeline for the second phase of the
funding period.
Next call is Thursday [date] at 11:00.
## Action Items
- Ulrik: Connect Vera and Mariama for implementation of submission and validation related
endpoints in the API Gateway.
- SF: Finalize review of flow data merge request by next week
## Call Summary
- Ulrik gave updates from EOSC Symposium and AI in Health meetings
- EOSC Symposium:
Minimal content delivered; many issues identified, but solutions remain unclear.
Overall, not highly relevant.
- AI in Health:
Industry is integrating AI into processes, but details are vague. Novo Nordisk made
provocative remarks, suggesting experiments should simply be repeated with larger cohorts.
Limited takeaways for us this year, but we hope to present next year.
- Updates from the focus groups
- Metadata Group (SB):
- Development branch is progressing well.
- Expected to be completed for WP25 by mid/late next week and merged into the main
branch.
- Metadata for Mass cytometry is planned for a February update.
- Submission Pipeline (VB):
- Demonstration of submission pipeline with file upload and metadata validation. File
upload control implemented, allowing all listed files to be uploaded simultaneously during
submission. Upload progress is displayed.
- Validation is possible on the HTML page, but often shows one error at a time.
- API validation is also available. The system is functional but requires adjustments
for the WP25 metadata model.
- Note: Streaming of file content is only supported by Chrome and Edge.
- HealthDCAT.AP (SB):
- Compliance is required eventually, but it won't be implemented for WP25.
- Mapping is ongoing. A balance is needed between capturing specific data and using
generic values (NaN).
- API Gateway (US):
- Endpoints are being implemented by Mariama.
- Coordination with VB is necessary for connecting with the submission pipeline.
## Backlog Items
No backlog
Best,
Ulrik
----
Dr. rer. nat. Ulrik Stervbo
Center for Translational Medicine, Immunology, and Transplantation
Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität Bochum
Hölkeskampring 40
44623 Herne
Germany
Immundiagnostik
Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität Bochum
Düngelstr 33
44623 Herne
Germany
Tel: +49 234 509 590 54
www.marienhospital-herne.de/TranslationaleMedizin<http://www.marienhos...
www.babel-lab.de<http://www.babel-lab.de/>
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