Dear Colleagues,

 

Here is the summary of today’s regular TA1/2 call. Thank you all for the great discussions! Please take a moment to rate the quality of today’s call: [Meeting Quality Feedback](https://ulrikstervbo.aidaform.com/meeting-quality-feedback).

 

Next call is Thursday Sep 4 at 11:00.

 

Action Items

 

- Everyone: Look at the [User Conference 2025 - Base4NFDI](https://base4nfdi.de/news-events/events/user-conference-2025), and e-mail Lina/Ulrik re topics of particular interest you want feedback on.

- Daniel and Vera: Researching Wagtail.

 

Call Summary

 

Ulrik informed there had been no progress on finalizing the WBS. Daniel commented on better integration of legal considerations, and adding extra activities to the WBS Level 1 components was encouraged - especially activities that tie in other components.

 

At the end of the call Daniel mentioned [Wagtail](https://wagtail.org/features/), a Django based content management system. Daniel and Vera will see which parts may be directly relevant to us. Christian Wünsch raised the need for involving all TAs to get a bigger picture of the whole repository infrastructure. Tasks relevant for the establishment of the repository should be distributed to the TAs with the skills and manpower. Ulrik mentioned he is working on getting TA-leads to define this. Ulrik mentioned creating an overview of more complete metadata model for CoRDI, which is accessible here: https://miro.com/app/board/uXjVIDJmedI=/

 

The majority of the call was devoted focus group updates:

 

- Search Database: Focus on technical and legal aspects of the search index.

- Metadata Completeness and QA: researching existing scores, challenge in weighting different properties.

- Web and command line client API: A draft for all endpoints has been created and those relevant for MVP have been selected.

- GDPR & Data Privacy Compliance: Preparation of an internal seminar at the end of September as well as legal framework and contract templates.

- Submission pipeline and Validation service: Focus on adding FastAPI to the existing validation service.

 

We agreed on the following feedback deadlines:

 

- Update in 2 weeks (Sep 4)

  - Search database (Vera)

  - Submission pipeline and Validation service (Vera)

- Update in 4 weeks (Sep 18)

  - Front-end (Lina)

  - Web and command line client API (Ulrik)

  - Metadata schema/Study ?

  - Metadata schema/Subject ?

  - Metadata schema/Sample ?

  - GDPR & Data Privacy Compliance (Conny)

  - Model Lifecycle Management (Ulrik)

- Update in 6 weeks (Oct 2)

  - Metadata schema/AIRR-seq (Ulrik)

  - Data from NFDI4Immuno are made available (Conny)

    - What is needed from other focus groups to enable completion of this component

  - Analysis pipeline integration (Ulrik)

 

Backlog Items

 

Next realistic update deadline from:

- Metadata completeness and QA (Ferrara)

- DCAT-AP/HealthDCAT-AP (Böhm)

 

Best, 

Ulrik

 

----

Dr. rer. nat. Ulrik Stervbo

Center for Translational Medicine, Immunology, and Transplantation

Marien Hospital Herne – Universitätsklinikum der Ruhr-Universität Bochum

Hölkeskampring 40

44623 Herne

Germany

 

Immundiagnostik

Marien Hospital Herne – Universitätsklinikum der Ruhr-Universität Bochum

Düngelstr 33

44623 Herne

Germany

 

Tel: +49 234 509 590 54

www.marienhospital-herne.de/TranslationaleMedizin

www.babel-lab.de

 

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Mitten in der St. Elisabeth Gruppe:

St. Anna Hospital Herne, Marien Hospital Herne – Universitätsklinikum der Ruhr-Universität Bochum,
Marien Hospital Witten, Rheumazentrum Ruhrgebiet, St. Marien Hospital Eickel,
Medizinische Reha für psychische Gesundheit, St. Elisabeth Stift Herne, Senioreneinrichtungen Widumer Höfe,
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Lukas Hospiz Herne, St. Elisabeth Hospiz Witten, Bildungszentrum Ruhr, Bildungswerk,
Campus der St. Elisabeth Gruppe, Kinder in der St. Elisabeth Gruppe

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Geschäftsführung: Dr. Sabine Edlinger, Simone Lauer

 

Registergericht:

HRB 9735 Amtsgericht Bochum

St.-Nr.: 325/5894/2251

 

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