June 2025 - NFDI4Immuno - TA1 & TA2

WG: [ext] AW: no group 1 and 2 meetings next week

by Sebastian Ferrara

Dear all, since there were only five of us today, we canceled the meeting. But we also have good news. The summer product is working. Vera and I made some small changes to get it running. The idea for next week is that Vera and I will present the pipeline and discuss the points, which we changed. For that, we thought that we'll eat cake together virtually, pat ourselves on the back, and say well done. See you next week, Sebastian Ferrara ________________________________ Von: Eckert, Cornelia <cornelia.eckert(a)charite.de> Gesendet: Donnerstag, 26. Juni 2025 08:57 An: 'Uhlemann, Heike'; Katherina Siewert; Sivizaca Conde, Daniel Juan; Alasfar, Lina; Heidenreich, Falk; Sebastian Ferrara; Ulrik.Stervbo(a)elisabethgruppe.de; Lucas.Barone(a)fli.de; Sebastian.Boehm(a)fli.de; Christian.Wuensch(a)ukmuenster.de Betreff: AW: [ext] AW: no group 1 and 2 meetings next week Dear all, Additionally, today is the “Legal and Ethical Aspects of Research Data Management” track day of the HeFDI Data Week 2025. https://www.uni-marburg.de/en/hefdi/data-events/hefdi-data-week#hefdi-dat... The interesting talks/discussions are exactly in our TA1/2 meeting time today. Daniel and I would like to participate. Possibly, somebody of the TA1/2 meeting leftovers could take over the protocol writing part or we skip the meeting today? Thank you and best wishes, Conny Von: Uhlemann, Heike <Uhlemann(a)dkms.de> Gesendet: Donnerstag, 26. Juni 2025 08:25 An: Katherina Siewert <Katherina.Siewert(a)bfr.bund.de>; Eckert, Cornelia <cornelia.eckert(a)charite.de>; Sivizaca Conde, Daniel Juan <daniel-juan.sivizaca-conde(a)charite.de>; Alasfar, Lina <lina.alasfar(a)dhzc-charite.de>; Heidenreich, Falk <Heidenreich(a)dkms.de>; Sebastian.Ferrara(a)drfz.de; Ulrik.Stervbo(a)elisabethgruppe.de; Lucas.Barone(a)fli.de; Sebastian.Boehm(a)fli.de; Christian.Wuensch(a)ukmuenster.de Betreff: [ext] AW: no group 1 and 2 meetings next week Dear all, due to a conflict of two appointments at the same time I will be in the TA1/TA2 meeting from 11:30 onwards. Sorry for that, I will join as soon as possible. See you later! Heike Von: Katherina Siewert <Katherina.Siewert(a)bfr.bund.de<mailto:Katherina.Siewert@bfr.bund.de>> Gesendet: Donnerstag, 19. Juni 2025 12:01 An: cornelia.eckert(a)charite.de<mailto:cornelia.eckert@charite.de>; daniel-juan.sivizaca-conde(a)charite.de<mailto:daniel-juan.sivizaca-conde@charite.de>; lina.alasfar(a)dhzc-charite.de<mailto:lina.alasfar@dhzc-charite.de>; Heidenreich, Falk <Heidenreich(a)dkms.de<mailto:Heidenreich@dkms.de>>; Uhlemann, Heike <Uhlemann(a)dkms.de<mailto:Uhlemann@dkms.de>>; Sebastian.Ferrara(a)drfz.de<mailto:Sebastian.Ferrara@drfz.de>; Ulrik.Stervbo(a)elisabethgruppe.de<mailto:Ulrik.Stervbo@elisabethgruppe.de>; Lucas.Barone(a)fli.de<mailto:Lucas.Barone@fli.de>; Sebastian.Boehm(a)fli.de<mailto:Sebastian.Boehm@fli.de>; Christian.Wuensch(a)ukmuenster.de<mailto:Christian.Wuensch@ukmuenster.de> Betreff: no group 1 and 2 meetings next week Hi, this e-mail should inform everyone that we just decided at the TA1/2 coordination meeting that there will be no group 1+2 meetings next week (Tuesday 3 pm, Thursday 10 am) because most people are not available. We will still have the TA1/2 coordination meeting on Thursday at 11 am ( led by Conny and Basti). Best wishes Katherina [cid:image001.png@01DBE676.E9E48A80] [cid:image002.png@01DBE676.E9E48A80]<https://www.bfr.bund.de/de/datenschutzerklaerung.html> [cid:image003.png@01DBE676.E9E48A80] ________________________________ DKMS Group gGmbH - Tübingen Geschäftsführung: Dr. Elke Neujahr (Vorsitzende), Dr. Julia Pingel, Bernd Weinel Amtsgericht Stuttgart, HRB Nr. 381293

1 month, 2 weeks

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Organizational Chart: Please Limit to Four Tasks

by Sebastian Ferrara

Dear colleagues, I noticed while creating the organizational chart in Miro, that some of us have listed a lot of tasks, while others have only listed one. As a result, the chart looks quite unbalanced. I would therefore like to ask everyone to enter a maximum of four tasks. The colleagues among us who are affected by this are Ulrik Stervbo, Sebastian Böhm, Heike Uhlemann, Falk Heidenreich, Charlyn Dörnte, Mariama Jaiteh and including myself. If anyone among us hasn't signed up yet, now is their chance. Here's the link: https://miro.com/welcomeonboard/R2drQTlPRTh2N0RsMDU4M0JjaDJGQ0p1cllHSGVLW... Best, Sebastian Ferrara

1 month, 3 weeks

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INFO: Friendly reminder about tomorrow's TA1/TA2 call

by Stervbo,Ulrik

Dear TA1/2 Members, This is a friendly reminder about our joint TA1/TA2 call scheduled for tomorrow from 11:00 - 12:00 (11:58). You can join the call using the following zoom link: https://uni-ms.zoom-x.de/j/67022118320?pwd=cE6Q1Jd0R5c6D8ha608NBK06j13y0F.1 (Meeting-ID: 670 2211 8320; Password: nfdi4imu; host code: 584003). Updates not covered during the call: - NFDI: Base4NFDI User Conference (UC4B2025) in Aachen; 2025.08.28-29 (right after CoRDI); https://events.gwdg.de/e/uc4b2025 You can find the call minutes on the NFDI4Immuno NextCloud under Task Area 1 > Call minutes (https://nextcloud.nfdi4immuno.de/f/1608). The agenda for tomorrow's call is stored at the same location. If you're unable to attend, please let me know. Regular joint TA1/TA2 calls are every Thursday 11:00 - 12:00. Best, Ulrik ---- Dr. rer. nat. Ulrik Stervbo Center for Translational Medicine, Immunology, and Transplantation Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität Bochum Hölkeskampring 40 44623 Herne Germany Immundiagnostik Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität Bochum Düngelstr 33 44623 Herne Germany Tel: +49 234 509 590 54 www.marienhospital-herne.de/TranslationaleMedizin<http://www.marienhospital-herne.de/TranslationaleMedizin> www.babel-lab.de<http://www.babel-lab.de/> _______________________________________________________________ Mitten in der St. Elisabeth Gruppe: St. Anna Hospital Herne, Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität Bochum, Marien Hospital Witten, Rheumazentrum Ruhrgebiet, St. Marien Hospital Eickel, Medizinische Reha für psychische Gesundheit, St. Elisabeth Stift Herne, Senioreneinrichtungen Widumer Höfe, Gästehaus St. Elisabeth, Ambulante Pflege, MVZ Ärzte - Herne | Wanne | Witten, Lukas Hospiz Herne, St. Elisabeth Hospiz Witten, Bildungszentrum Ruhr, Bildungswerk, Campus der St. Elisabeth Gruppe, Kinder in der St. Elisabeth Gruppe _______________________________________________________________ Aufsichtsratsvorsitzender: Dr. Hans Willmes Geschäftsführung: Dr. Sabine Edlinger, Simone Lauer Registergericht: HRB 9735 Amtsgericht Bochum St.-Nr.: 325/5894/2251 _______________________________________________________________ Wir bitten wegen der aktuellen Virenangriffe um folgende Beachtung: Das Sicherheitskonzept der St. Elisabeth Gruppe erlaubt momentan keine Zustellung von .doc (x) und .xls(x) Dateien! Schicken Sie Dokumente nur in Form von .pdf Dateien oder nehmen Sie Kontakt auf, um andere Übertragungsmöglichkeiten abzusprechen.

2 months

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INFO: TA1/2 Regular call - Summary of today's call

by Stervbo,Ulrik

Dear Colleagues, Here is the summary of today's regular TA1/2 call. Thank you all for the great interactions! - We started with a brief welcome and a spillover discussion from the Model Development Group on Ontology validation. - Ulrik provided a summary of the search functionality visions. Open Loops for SP25 Deadline - We discussed the open loops for the SP25 deadline, which is set for *June 30*. Here are the key points: - Group 1: - We realized that 'Disease' is missing in the model. Unclear is why. - Ulrik and Daniel will determine the current status and ideas. - Update model as needed. - Deadline: June 13 - Group 2: - Elements of simple controlled vocabularies were discussed, including biological sex, data access level, subject type, study type, species, and time units. - Complex ontologies such as Human comorbidities, Ancestry, and Tissue are excluded for SP25 but need validation. - Simple controlled vocabularies needs to be defined and included in the templates for SP25 - Deadline: June 18 - Group 1: - Heike and Conny fill data using the templates with defined simple controlled vocabularies - Deadline: June 23 - Group 3: Final Model and Template - Need a list of selected terms for each controlled vocabulary and a template filled with real data. - Create a final validation pipeline - Deadline: June 30 Action Items Ulrik/Daniel: Check if the disease is in the model and determine the current status and ideas. Backlog Items - Improving Intra-Group Communication - Ulrik briefly mentioned initiating a thinking process to improve intra-group communication. - Organizational chart and WP25 Timeline - Ferrara will present work on the organizational chart and WP25 Timeline at the next call Please keep all deadlines in mind that we can deliver a prototype by the end of the month. If you have any questions or need further clarification on any of the action items, feel free to reach out. Best, Ulrik ---- Dr. rer. nat. Ulrik Stervbo Center for Translational Medicine, Immunology, and Transplantation Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität Bochum Hölkeskampring 40 44623 Herne Germany Immundiagnostik Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität Bochum Düngelstr 33 44623 Herne Germany Tel: +49 234 509 590 54 www.marienhospital-herne.de/TranslationaleMedizin<http://www.marienhospital-herne.de/TranslationaleMedizin> www.babel-lab.de<http://www.babel-lab.de/> _______________________________________________________________ Mitten in der St. Elisabeth Gruppe: St. Anna Hospital Herne, Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität Bochum, Marien Hospital Witten, Rheumazentrum Ruhrgebiet, St. Marien Hospital Eickel, Medizinische Reha für psychische Gesundheit, St. Elisabeth Stift Herne, Senioreneinrichtungen Widumer Höfe, Gästehaus St. Elisabeth, Ambulante Pflege, MVZ Ärzte - Herne | Wanne | Witten, Lukas Hospiz Herne, St. Elisabeth Hospiz Witten, Bildungszentrum Ruhr, Bildungswerk, Campus der St. Elisabeth Gruppe, Kinder in der St. Elisabeth Gruppe _______________________________________________________________ Aufsichtsratsvorsitzender: Dr. Hans Willmes Geschäftsführung: Dr. Sabine Edlinger, Simone Lauer Registergericht: HRB 9735 Amtsgericht Bochum St.-Nr.: 325/5894/2251 _______________________________________________________________ Wir bitten wegen der aktuellen Virenangriffe um folgende Beachtung: Das Sicherheitskonzept der St. Elisabeth Gruppe erlaubt momentan keine Zustellung von .doc (x) und .xls(x) Dateien! Schicken Sie Dokumente nur in Form von .pdf Dateien oder nehmen Sie Kontakt auf, um andere Übertragungsmöglichkeiten abzusprechen.

2 months, 1 week

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Problems signing in to NextCloud

by Stervbo,Ulrik

Moin Christian, Yesterday several of us experiences problems logging into NFDI4Immuno NextCloud. The given error is 'No id_token was found.'. Katherina and I use ORCID for the login, Heike uses google. Lucas is not being prompted to login, so clearly no problems there. The mobile app works well. It seems that I need to log in every time my network change. Please let me know which information you need to solve the problem. Best, Ulrik ---- Dr. rer. nat. Ulrik Stervbo Center for Translational Medicine, Immunology, and Transplantation Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität Bochum Hölkeskampring 40 44623 Herne Germany Immundiagnostik Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität Bochum Düngelstr 33 44623 Herne Germany Tel: +49 234 509 590 54 www.marienhospital-herne.de/TranslationaleMedizin<http://www.marienhospital-herne.de/TranslationaleMedizin> www.babel-lab.de<http://www.babel-lab.de/> _______________________________________________________________ Mitten in der St. Elisabeth Gruppe: St. Anna Hospital Herne, Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität Bochum, Marien Hospital Witten, Rheumazentrum Ruhrgebiet, St. Marien Hospital Eickel, Medizinische Reha für psychische Gesundheit, St. Elisabeth Stift Herne, Senioreneinrichtungen Widumer Höfe, Gästehaus St. Elisabeth, Ambulante Pflege, MVZ Ärzte - Herne | Wanne | Witten, Lukas Hospiz Herne, St. Elisabeth Hospiz Witten, Bildungszentrum Ruhr, Bildungswerk, Campus der St. Elisabeth Gruppe, Kinder in der St. Elisabeth Gruppe _______________________________________________________________ Aufsichtsratsvorsitzender: Dr. Hans Willmes Geschäftsführung: Dr. Sabine Edlinger, Simone Lauer Registergericht: HRB 9735 Amtsgericht Bochum St.-Nr.: 325/5894/2251 _______________________________________________________________ Wir bitten wegen der aktuellen Virenangriffe um folgende Beachtung: Das Sicherheitskonzept der St. Elisabeth Gruppe erlaubt momentan keine Zustellung von .doc (x) und .xls(x) Dateien! Schicken Sie Dokumente nur in Form von .pdf Dateien oder nehmen Sie Kontakt auf, um andere Übertragungsmöglichkeiten abzusprechen.

2 months, 1 week

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INFO: Friendly reminder about tomorrow's TA1/TA2 call

by Stervbo,Ulrik

Dear TA1/2 Members, This is a friendly reminder about our joint TA1/TA2 call scheduled for tomorrow from 11:00 - 12:00 (11:58). You can join the call using the following zoom link: <https://uni-ms.zoom-x.de/j/67022118320?pwd=cE6Q1Jd0R5c6D8ha608NBK06j13y0F.1> (Meeting-ID: 670 2211 8320; Password: nfdi4imu; host code: 584003). We have the following updates/FYI/reminders which we will not cover at the call: - Mariama is working on identifying pros and cons of different ways of structuring our work in GitLab Now we are closing in on the deadline for the summer product 2025 (July 12), need should identify still open loops to be closed, and once that is in place we will focus on the next deliverable - WP25. Please review the diagram Ferrara send yesterday and identify milestones/tasks where you want to focus on for the next period. You can find the call minutes on the NFDI4Immuno NextCloud under Task Area 1 > Call minutes (<https://nextcloud.nfdi4immuno.de/f/1608>). The agenda for tomorrow's call is stored at the same location. Given the problems with our NextCloud I have been using a local version of the meeting agenda/minutes and marked the one in NextCloud as Ulrik_local. Please keep this in mind if you make any changes. My local file is attached. If you're unable to attend, please let me know. Regular joint TA1/TA2 calls are every Thursday 11:00 - 12:00. Best, Ulrik ---- Dr. rer. nat. Ulrik Stervbo Center for Translational Medicine, Immunology, and Transplantation Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität Bochum Hölkeskampring 40 44623 Herne Germany Immundiagnostik Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität Bochum Düngelstr 33 44623 Herne Germany Tel: +49 234 509 590 54 www.marienhospital-herne.de/TranslationaleMedizin<http://www.marienhospital-herne.de/TranslationaleMedizin> www.babel-lab.de<http://www.babel-lab.de/> _______________________________________________________________ Mitten in der St. Elisabeth Gruppe: St. Anna Hospital Herne, Marien Hospital Herne - Universitätsklinikum der Ruhr-Universität Bochum, Marien Hospital Witten, Rheumazentrum Ruhrgebiet, St. Marien Hospital Eickel, Medizinische Reha für psychische Gesundheit, St. Elisabeth Stift Herne, Senioreneinrichtungen Widumer Höfe, Gästehaus St. Elisabeth, Ambulante Pflege, MVZ Ärzte - Herne | Wanne | Witten, Lukas Hospiz Herne, St. Elisabeth Hospiz Witten, Bildungszentrum Ruhr, Bildungswerk, Campus der St. Elisabeth Gruppe, Kinder in der St. Elisabeth Gruppe _______________________________________________________________ Aufsichtsratsvorsitzender: Dr. Hans Willmes Geschäftsführung: Dr. Sabine Edlinger, Simone Lauer Registergericht: HRB 9735 Amtsgericht Bochum St.-Nr.: 325/5894/2251 _______________________________________________________________ Wir bitten wegen der aktuellen Virenangriffe um folgende Beachtung: Das Sicherheitskonzept der St. Elisabeth Gruppe erlaubt momentan keine Zustellung von .doc (x) und .xls(x) Dateien! Schicken Sie Dokumente nur in Form von .pdf Dateien oder nehmen Sie Kontakt auf, um andere Übertragungsmöglichkeiten abzusprechen.

2 months, 1 week

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Overview of the tasks in Miro finished

by Sebastian Ferrara

Dear colleagues, I created an overview of the tasks in Miro that would need to be completed for the Winter Product. Each of us should take a look at the tasks and consider which ones they would most like to do or which best match their expertise. We could discuss that at the TA1/TA2 meeting next week or so. Here is the link to the board: https://miro.com/welcomeonboard/MXB3TW5CdkpDSVJDS1ZqUEZIcENXRDkwS245WHV5K... Best, Sebastian Ferrara

2 months, 1 week

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Metadata model file

by Barone, Lucas

Dear all I have unified the two metadata models that were present in group 1 and group 2, and removed the one from group 2. Now we have a single metadata model located in group 1 named "Metadata_Model_V2_SP.xlsx". The unification consisted of two additional rows colored in grey, with information that may be useful for the data submission file, and can be removed at any time, because they are not going to be part of the summer product. Of course, no information was lost. See you soon. Kind regards, Dr. Lucas Barone Institut für Immunologie ___________________________________________ Friedrich-Loeffler-Institut Bundesforschungsinstitut für Tiergesundheit Federal Research Institute for Animal Health Südufer 10 | 17493 Greifswald - Insel Riems Tel: +49 38351 7 1888/1604 https://www.fli.de/ ¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯¯ Instagram<https://www.instagram.com/loeffler_news> LinkedIn<https://www.linkedin.com/company/friedrich-loeffler-institut>

2 months, 1 week

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2025

NFDI4Immuno - TA1 & TA2 June 2025 ----- 2025 ----- August 2025 July 2025 June 2025 May 2025 April 2025 March 2025 February 2025 January 2025

NFDI4Immuno - TA1 & TA2 June 2025